5OZB
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 22
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | BESSY BEAMLINE 14.1 |
| Synchrotron site | BESSY |
| Beamline | 14.1 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-09-04 |
| Detector | MARMOSAIC 225 mm CCD |
| Wavelength(s) | 0.91841 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 45.398, 73.149, 53.069 |
| Unit cell angles | 90.00, 109.97, 90.00 |
Refinement procedure
| Resolution | 34.983 - 1.488 |
| R-factor | 0.1315 |
| Rwork | 0.130 |
| R-free | 0.16410 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4y5l |
| RMSD bond length | 0.007 |
| RMSD bond angle | 1.184 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER (2.5.7) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 42.667 | 1.580 | |
| High resolution limit [Å] | 1.490 | 4.440 | 1.490 |
| Rmerge | 0.062 | 0.027 | 0.334 |
| Rmeas | 0.071 | 0.031 | 0.382 |
| Total number of observations | 222420 | ||
| Number of reflections | 51412 | 2040 | 7976 |
| <I/σ(I)> | 18.95 | 47.59 | 4.86 |
| Completeness [%] | 96.1 | 98.2 | 92.5 |
| Redundancy | 4.326 | ||
| CC(1/2) | 0.999 | 0.999 | 0.920 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 22 with the SMILES code C[C@H]1CCC[C@H]1OC[C@H](O)CN1CCN(CCO)CC1 |






