5OZ3
Automated refinement of diffraction data obtained from an endothiapepsin crystal treated with fragment 14
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-09-04 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 45.599, 72.823, 52.732 |
Unit cell angles | 90.00, 108.86, 90.00 |
Refinement procedure
Resolution | 43.150 - 1.754 |
R-factor | 0.159 |
Rwork | 0.156 |
R-free | 0.21660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.010 |
RMSD bond angle | 1.193 |
Data reduction software | HKL-2000 |
Data scaling software | XDS |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.780 |
High resolution limit [Å] | 1.750 | 4.750 | 1.750 |
Rmerge | 0.080 | 0.037 | 0.437 |
Total number of observations | 125888 | ||
Number of reflections | 31788 | ||
<I/σ(I)> | 11.9 | ||
Completeness [%] | 97.8 | 98.9 | 95.9 |
Redundancy | 4 | 4 | 4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment 14 with the SMILES code CNC(=S)NC1=CC=C(Br)C=C1Cl |