5OW7
VDR complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID30B |
Synchrotron site | ESRF |
Beamline | ID30B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976251 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 65.699, 65.699, 262.259 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 21.800 - 2.100 |
R-factor | 0.1892 |
Rwork | 0.187 |
R-free | 0.22660 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2hc4 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.030 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX |
Refinement software | BUSTER (2.10.2) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 21.800 | 2.175 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.096 | |
Number of reflections | 20462 | 1968 |
<I/σ(I)> | 11.75 | 2.95 |
Completeness [%] | 99.0 | 99 |
Redundancy | 1.2 | 1.1 |
CC(1/2) | 1.000 | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 298 | 50 mM Bis-Tris pH 6.5, 1.6 M lithium sulfate and 50 mM magnesium sulfate |