5OS9
Structure of the B3 DNA-Binding Domain of NGA1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 30.758, 151.179, 47.513 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 75.590 - 1.800 |
R-factor | 0.1529 |
Rwork | 0.148 |
R-free | 0.19480 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lduA |
RMSD bond length | 0.019 |
RMSD bond angle | 1.530 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.20) |
Phasing software | MoRDa (1.3.02) |
Refinement software | PHENIX ((1.10_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 75.590 | 1.864 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.019 | 0.106 |
Number of reflections | 39391 | 2062 |
<I/σ(I)> | 21.81 | 6.85 |
Completeness [%] | 99.2 | 98 |
Redundancy | 2 | 2 |
CC(1/2) | 0.999 | 0.971 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | Reservoir solution: 0.1 M HEPES-NaOH pH 7.5, 0.2 M potassium sodium tartrate, 1.6 M potassium-sodium phosphate, 5% PEG 4000. Protein concentration: 7.1 mg/ml. Drop: 0.4 microL protein solution + 0.2 microL reservoir solution. |