5OQ2
Se-SAD structure of the functional region of Cwp19 from Clostridium difficile
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-15 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9794 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 55.280, 60.410, 105.050 |
Unit cell angles | 90.00, 94.21, 90.00 |
Refinement procedure
Resolution | 55.130 - 2.300 |
R-factor | 0.19583 |
Rwork | 0.193 |
R-free | 0.25411 |
Structure solution method | SAD |
RMSD bond length | 0.009 |
RMSD bond angle | 1.311 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | CRANK2 |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 55.130 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.255 | 0.591 |
Rmeas | 0.260 | 0.603 |
Rpim | 0.050 | 0.116 |
Number of reflections | 30986 | 3026 |
<I/σ(I)> | 28.2 | 9.9 |
Completeness [%] | 100.0 | 100 |
Redundancy | 52.7 | 53.6 |
CC(1/2) | 0.999 | 0.980 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 289 | 90% (50 mM monobasic potassium phosphate, 14% PEG 8000) 10% (20 mM xylitol, 20 mM myo-inositol, 20 mM D-fructose, 20 mM L-rhammnose monohydrate, 20 mM D-sorbitol, 100 mM BES/TEA pH 7.5, 40% pentane-1,5,-diol) |