5OPA
The crystal structure of P450 CYP121 in complex with lead compound 7b
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-24 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 77.887, 77.887, 263.547 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 53.500 - 1.345 |
R-factor | 0.1317 |
Rwork | 0.130 |
R-free | 0.15740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | In house model |
RMSD bond length | 0.020 |
RMSD bond angle | 1.764 |
Data reduction software | xia2 |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12rc1_2807: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.500 | 1.393 |
High resolution limit [Å] | 1.345 | 1.345 |
Rmerge | 0.068 | 0.504 |
Rpim | 0.016 | 0.235 |
Number of reflections | 105311 | 9991 |
<I/σ(I)> | 24.27 | 2.44 |
Completeness [%] | 99.6 | 96.27 |
Redundancy | 15.7 | 5.1 |
CC(1/2) | 0.998 | 0.798 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 800 nL drops with protein-to-mother liquor at a ratio of 1:1, by vapor diffusion in 1.5 to 2.1 M ammonium sulfate and 0.1 M sodium MES or Cacodylate from pH 5.5 to 6.15 |