5OGQ
Structure of cathepsin B1 from Schistosoma mansoni in complex with WRR391 inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-16 |
Detector | DECTRIS PILATUS 300K |
Wavelength(s) | 1.541870 |
Spacegroup name | P 31 |
Unit cell lengths | 82.390, 82.390, 99.390 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 38.060 - 1.910 |
R-factor | 0.1679 |
Rwork | 0.167 |
R-free | 0.18630 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4i07 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.409 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.060 | 38.060 | 1.950 |
High resolution limit [Å] | 1.910 | 8.520 | 1.910 |
Rmerge | 0.078 | 0.031 | 0.799 |
Rmeas | 0.095 | 0.035 | 1.128 |
Number of reflections | 52771 | 640 | 2149 |
<I/σ(I)> | 9.72 | 33.87 | 0.68 |
Completeness [%] | 89.5 | 96.2 | 48.7 |
Redundancy | 2.799 | 3.814 | 1.438 |
CC(1/2) | 0.996 | 0.999 | 0.400 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | 0.14 M Ammonium Acetate, 0.07 M Sodium Citrate, 21% PEG 400 c (protein) = 3.4 mg/ml ratio protein : reservoir : H2O = 2:0.5:0.5ul cryocooled in mother liquor |