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5OGQ

Structure of cathepsin B1 from Schistosoma mansoni in complex with WRR391 inhibitor

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007
Temperature [K]100
Detector technologyPIXEL
Collection date2016-02-16
DetectorDECTRIS PILATUS 300K
Wavelength(s)1.541870
Spacegroup nameP 31
Unit cell lengths82.390, 82.390, 99.390
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution38.060 - 1.910
R-factor0.1679
Rwork0.167
R-free0.18630
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4i07
RMSD bond length0.010
RMSD bond angle1.409
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0049)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]38.06038.0601.950
High resolution limit [Å]1.9108.5201.910
Rmerge0.0780.0310.799
Rmeas0.0950.0351.128
Number of reflections527716402149
<I/σ(I)>9.7233.870.68
Completeness [%]89.596.248.7
Redundancy2.7993.8141.438
CC(1/2)0.9960.9990.400
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.12930.14 M Ammonium Acetate, 0.07 M Sodium Citrate, 21% PEG 400 c (protein) = 3.4 mg/ml ratio protein : reservoir : H2O = 2:0.5:0.5ul cryocooled in mother liquor

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PDB entries from 2024-08-07

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