5OG7
Endothiapepsin in complex with hydrazide fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-10 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91841 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 44.883, 73.467, 52.114 |
Unit cell angles | 90.00, 109.40, 90.00 |
Refinement procedure
Resolution | 42.335 - 1.823 |
R-factor | 0.1648 |
Rwork | 0.162 |
R-free | 0.21130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4y5l |
RMSD bond length | 0.009 |
RMSD bond angle | 0.947 |
Data reduction software | XDS (May 1, 2016) |
Data scaling software | XDS (May 1, 2016) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.335 | 1.930 |
High resolution limit [Å] | 1.820 | 1.820 |
Rmeas | 0.587 | |
Number of reflections | 27697 | 4215 |
<I/σ(I)> | 12.89 | 2.36 |
Completeness [%] | 96.8 | 91.2 |
Redundancy | 3.6 | 3.2 |
CC(1/2) | 0.997 | 0.848 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.6 | 290 | 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000; crystal obtained by streak-seeding and soaked with 90 mM of fragment a with the SMILES code O=C(CCCl)NNC1=[NH+]CCN1 |