5OEB
Structure of large terminase from the thermophilic bacteriophage D6E in complex with ADP (Crystal form 3)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04 |
Synchrotron site | Diamond |
Beamline | I04 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-07-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9795 |
Spacegroup name | P 1 |
Unit cell lengths | 100.878, 102.859, 103.029 |
Unit cell angles | 91.13, 117.16, 119.17 |
Refinement procedure
Resolution | 45.800 - 3.100 |
R-factor | 0.2393 |
Rwork | 0.237 |
R-free | 0.27790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.174 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.27) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.800 | 45.800 | 3.190 |
High resolution limit [Å] | 3.100 | 13.140 | 3.100 |
Rmerge | 0.164 | 0.030 | 0.832 |
Rmeas | 0.232 | 0.043 | 1.177 |
Rpim | 0.164 | 0.030 | 0.832 |
Total number of observations | 95733 | 1171 | 7439 |
Number of reflections | 53693 | 646 | 4293 |
<I/σ(I)> | 4 | 15 | 1 |
Completeness [%] | 96.4 | 88.6 | 94 |
Redundancy | 1.8 | 1.8 | 1.7 |
CC(1/2) | 0.972 | 0.996 | 0.336 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 1.2 M Ammonium Sulfate, 0.1 M HEPES pH 8.0 |