5O4M
Fresh crystals of HcgC from Methanococcus maripaludis cocrystallized with SAH and pyridinol
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-02-17 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 1.00001 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 71.875, 83.536, 99.987 |
Unit cell angles | 90.00, 109.54, 90.00 |
Refinement procedure
Resolution | 46.680 - 2.100 |
R-factor | 0.2037 |
Rwork | 0.202 |
R-free | 0.23350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o4h |
RMSD bond length | 0.010 |
RMSD bond angle | 1.190 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (11.4.06) |
Refinement software | BUSTER (2.10.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.110 | 2.210 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.054 | 0.544 |
Rpim | 0.039 | 0.412 |
Number of reflections | 63739 | 9372 |
<I/σ(I)> | 11.5 | 1.7 |
Completeness [%] | 97.9 | 98.8 |
Redundancy | 2.6 | 2.5 |
CC(1/2) | 0.998 | 0.804 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 281 | The drop consists of 1 ul of enzyme solution containing ~5 mg/ml HcgC, 2 mM pyridinol (dissolved in 100% DMSO) and 2 mM SAH mixed with 1 ul of the reservoir solution : 100 mM HEPES/NaOH pH 7.5, 0.1 M NaCl, and 30% 2-Methyl-2,4-pentanediol. After only 4 days the crystals were immediately fished and frozen in liquid nitrogen for synchrotron radiation. |