5O1X
Structure of Nrd1 RNA binding domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-02-08 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979300 |
Spacegroup name | P 65 |
Unit cell lengths | 58.390, 58.390, 92.446 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.570 - 1.600 |
R-factor | 0.17904 |
Rwork | 0.178 |
R-free | 0.20805 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5o1w |
RMSD bond length | 0.007 |
RMSD bond angle | 1.249 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 92.450 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.081 | 0.600 |
Rpim | 0.018 | 0.136 |
Number of reflections | 23596 | |
<I/σ(I)> | 26.82 | 6.1 |
Completeness [%] | 100.0 | 100 |
Redundancy | 2 | |
CC(1/2) | 0.990 | 0.950 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291 | 0.2 M Potassium Thiocyanate, 23% PEG 3350 |