Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NY5

The apo structure of 3,4-dihydroxybenzoic acid decarboxylases from Enterobacter cloacae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, DESY BEAMLINE P11
Synchrotron sitePETRA III, DESY
BeamlineP11
Temperature [K]100
Detector technologyPIXEL
Collection date2014-01-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9796
Spacegroup nameH 3 2
Unit cell lengths209.907, 209.907, 162.179
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.060 - 2.501
R-factor0.2032
Rwork0.201
R-free0.23590
Structure solution methodSAD
RMSD bond length0.003
RMSD bond angle0.560
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareAutoSol
Refinement softwarePHENIX ((1.10.1_2155))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.0602.590
High resolution limit [Å]2.5002.500
Rmerge0.1180.779
Number of reflections471974613
<I/σ(I)>22.3
Completeness [%]100.099
Redundancy2019.9
CC(1/2)0.999
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2890.15 M L-Arginine, 0.075 M sodium acetate pH 5.0, 6 % w/v PGA protein concentrations of 5.5 and 14 mg/mL

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon