Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5NXT

Wobble base paired RNA double helix

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]80
Detector technologyPIXEL
Collection date2016-01-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9184
Spacegroup nameP 63 2 2
Unit cell lengths44.997, 44.997, 94.205
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution38.969 - 1.379
R-factor0.1308
Rwork0.130
R-free0.15140
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ts0
RMSD bond length0.010
RMSD bond angle1.490
Data reduction softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]38.9701.460
High resolution limit [Å]1.3791.380
Number of reflections12286
<I/σ(I)>15.081.5
Completeness [%]99.799.8
Redundancy10.47
CC(1/2)1.0000.690
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP4277PEG 6000, Lithium chloride, Citric Acid

237735

PDB entries from 2025-06-18

PDB statisticsPDBj update infoContact PDBjnumon