5NRS
Human DNMT3B PWWP domain in complex with N,N-bis(2-hydroxypropyl)ethanolamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-12-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978570 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 74.930, 74.930, 157.470 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.810 - 2.300 |
R-factor | 0.1977 |
Rwork | 0.195 |
R-free | 0.24770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3qkj |
RMSD bond length | 0.008 |
RMSD bond angle | 1.164 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.1_1168) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.810 | 2.440 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.050 | 0.893 |
Number of reflections | 23390 | |
<I/σ(I)> | 24.8 | 1.89 |
Completeness [%] | 99.5 | 96.9 |
Redundancy | 9.3 | 7.2 |
CC(1/2) | 0.999 | 0.614 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 0.1 M MES,0.2 M Li2SO4, 23-33% PEG 3350 |