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5NR3

Human DNMT3B PWWP domain in complex with ethambutol

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 2
Synchrotron siteSOLEIL
BeamlinePROXIMA 2
Temperature [K]100
Detector technologyCCD
Collection date2015-09-19
DetectorADSC QUANTUM 315r
Wavelength(s)0.9801
Spacegroup nameP 32 2 1
Unit cell lengths74.200, 74.200, 155.800
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution40.391 - 2.300
R-factor0.1982
Rwork0.196
R-free0.23790
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3qkj
RMSD bond length0.008
RMSD bond angle1.125
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.8.1_1168)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]40.3912.430
High resolution limit [Å]2.3002.300
Rmerge0.0780.873
Number of reflections227663549
<I/σ(I)>273.87
Completeness [%]99.798.6
Redundancy9.69.4
CC(1/2)0.9990.883
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2980.1 M MES,0.2 M Li2SO4, 23-33% PEG 3350

222036

PDB entries from 2024-07-03

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