5NPB
Crystal Structure of cjAgd31B (alpha-transglucosylase from Glycoside Hydrolase Family 31) in complex with alpha Cyclophellitol Cyclosulfate probe ME647
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-03-18 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 6 2 2 |
Unit cell lengths | 197.380, 197.380, 102.909 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 49.850 - 1.900 |
R-factor | 0.19769 |
Rwork | 0.196 |
R-free | 0.22785 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4b9y |
RMSD bond length | 0.014 |
RMSD bond angle | 1.673 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.850 | 1.930 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.077 | 0.755 |
Rpim | 0.016 | 0.156 |
Number of reflections | 92616 | 4491 |
<I/σ(I)> | 30.2 | 5.5 |
Completeness [%] | 100.0 | 100 |
Redundancy | 24.1 | 24.1 |
CC(1/2) | 1.000 | 0.959 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 1.8 M AMMONIUM SULFATE, 0.1 M HEPES (PH 7.0), 2% PEG400 |