5NOD
PASTA subunit 4 of Streptococcus pneumoniae STKP crystallized with PEG and succinate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-18 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.00003 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 87.760, 87.760, 40.958 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.774 - 1.900 |
R-factor | 0.2101 |
Rwork | 0.209 |
R-free | 0.22450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ouv |
RMSD bond length | 0.008 |
RMSD bond angle | 0.863 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.774 | 1.950 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.042 | 0.577 |
Rmeas | 0.041 | 0.603 |
Rpim | 0.012 | 0.164 |
Number of reflections | 7718 | 550 |
<I/σ(I)> | 42.7 | 4.67 |
Completeness [%] | 99.9 | 100 |
Redundancy | 12.386 | 11.773 |
CC(1/2) | 1.000 | 0.943 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 15% PEG3350 0,1M Succinate pH 7.0 |