5NNY
Crystal structure of the phosphatase domain from the Legionella effector WipB
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-11-26 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.99999 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 49.400, 79.100, 79.700 |
Unit cell angles | 90.00, 98.70, 90.00 |
Refinement procedure
Resolution | 48.832 - 1.700 |
R-factor | 0.1888 |
Rwork | 0.187 |
R-free | 0.21730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5n6x |
RMSD bond length | 0.007 |
RMSD bond angle | 0.848 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | PHENIX ((1.11.1_2575: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.832 | 1.740 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.116 | |
Number of reflections | 66193 | 4732 |
<I/σ(I)> | 8.73 | 1.21 |
Completeness [%] | 99.3 | 97.1 |
Redundancy | 3.6 | |
CC(1/2) | 0.996 | 0.480 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 289 | 0.23 M ammonium citrate dibasic and 22% PEG3000 |