5NGY
Crystal structure of Leuconostoc citreum NRRL B-1299 dextransucrase DSR-M
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-15 |
Detector | DECTRIS PILATUS3 2M |
Wavelength(s) | 0.8729 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.869, 128.810, 234.518 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 3.700 |
R-factor | 0.19453 |
Rwork | 0.192 |
R-free | 0.23643 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lfc |
RMSD bond length | 0.007 |
RMSD bond angle | 1.098 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.900 |
High resolution limit [Å] | 3.700 | 3.700 |
Rmerge | 0.195 | 0.528 |
Rpim | 0.100 | 0.284 |
Number of reflections | 34388 | 4910 |
<I/σ(I)> | 3.6 | 1.4 |
Completeness [%] | 98.3 | 97.3 |
Redundancy | 4.3 | 4 |
CC(1/2) | 0.980 | 0.822 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 285 | 20% PEG3350, 0.2M KSCN, 0.1 Pr(III)acetate, BIS-TRIS pH 6.5 |