5NFF
Crystal structure of GP1 receptor binding domain from Morogoro virus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-27 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9194 |
Spacegroup name | P 32 |
Unit cell lengths | 127.769, 127.769, 251.704 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 46.188 - 2.615 |
R-factor | 0.1757 |
Rwork | 0.174 |
R-free | 0.20740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4zjf |
RMSD bond length | 0.009 |
RMSD bond angle | 1.180 |
Data reduction software | XDS (November 3, 2014) |
Data scaling software | XSCALE (November 3, 2014) |
Phasing software | PHASER |
Refinement software | PHENIX (dev_2236) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.190 | 2.700 |
High resolution limit [Å] | 2.610 | 2.610 |
Rmeas | 0.149 | 0.963 |
Number of reflections | 138414 | |
<I/σ(I)> | 9.09 | 1.58 |
Completeness [%] | 98.9 | 92.2 |
Redundancy | 4 | 3.8 |
CC(1/2) | 0.987 | 0.350 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 26% PEG 8000, 100 mM sodium citrate pH 4.0 and 0.01% octylphenoxypolyethoxyethanol (IGEPAL) |