5NE0
Room temperature in-situ structure of hen egg-white lysozyme from crystals enclosed between ultrathin silicon nitride membranes
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 293 |
Detector technology | PIXEL |
Collection date | 2017-02-25 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 79.500, 79.500, 37.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.750 - 1.570 |
R-factor | 0.1665 |
Rwork | 0.166 |
R-free | 0.18390 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2lyz |
RMSD bond length | 0.005 |
RMSD bond angle | 0.770 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.750 | 1.610 |
High resolution limit [Å] | 1.570 | 1.570 |
Rmeas | 0.050 | 0.847 |
Number of reflections | 30841 | 1669 |
<I/σ(I)> | 13.74 | 1.04 |
Completeness [%] | 95.4 | 95.2 |
Redundancy | 3.96 | |
CC(1/2) | 0.990 | 0.700 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 90 ul (50mg/ml H2O) lysozyme solution + 20 ul of the precipitant solution (0.1M NaAc 0.6M NaCl) and 10ul 25% ethylene glycol (in water) were mixed together. 20 microliters from this mixture deposited onto the silicon nitride chip. |