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5NDV

Crystal structure of Paromomycin bound to the yeast 80S ribosome

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSOLEIL BEAMLINE PROXIMA 1
Synchrotron siteSOLEIL
BeamlinePROXIMA 1
Temperature [K]90
Detector technologyPIXEL
Collection date2015-07-15
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0
Spacegroup nameP 1 21 1
Unit cell lengths434.530, 293.330, 295.790
Unit cell angles90.00, 97.40, 90.00
Refinement procedure
Resolution146.665 - 3.300
R-factor0.2039
Rwork0.203
R-free0.25000
Structure solution methodMOLECULAR REPLACEMENT
RMSD bond length0.006
RMSD bond angle0.990
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]146.665150.0003.400
High resolution limit [Å]3.300146.6653.300
Rmerge0.3211.876
Rmeas0.3322.031
Total number of observations16313251
Number of reflections109845593862
<I/σ(I)>7.370.96
Completeness [%]100.099.9
Redundancy14.8516.681
CC(1/2)0.9890.349
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7277PEG 20K, KSCN, Mg Acetate, Tris-Acetate, Glycerol, Spermidine

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