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5NBE

[Ru(TAP)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyPIXEL
Collection date2016-02-20
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9795
Spacegroup nameP 43 21 2
Unit cell lengths47.880, 47.880, 29.140
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.890 - 1.510
R-factor0.16628
Rwork0.165
R-free0.19033
Structure solution methodSAD
RMSD bond length0.016
RMSD bond angle2.869
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareSHELXDE
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]24.8901.550
High resolution limit [Å]1.5101.510
Rmerge0.0781.318
Rpim0.0390.588
Number of reflections5452394
<I/σ(I)>11.41.4
Completeness [%]96.797.2
Redundancy6.25.9
CC(1/2)0.9980.593
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP72921uL 1mM dsDNA, 1ul 4mM rac[Ru(TAP)2(dppz-11-CM)]2+, 6ul of a solution containing 10% (v/v) 2-methyl-2,4-pentanediol, 80mM NaCl, 20mM Na-cacodylate pH 7, 20mM BaCl2 and 12mM spermine tetra-HCl equilibrated against 500uL 35% 2-methyl-2,4-pentanediol.

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PDB entries from 2024-11-06

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