5NBE
[Ru(TAP)2(dppz-11-CN)]2+ bound to d(TCGGCGCCGA)2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I02 |
Synchrotron site | Diamond |
Beamline | I02 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-20 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9795 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 47.880, 47.880, 29.140 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 24.890 - 1.510 |
R-factor | 0.16628 |
Rwork | 0.165 |
R-free | 0.19033 |
Structure solution method | SAD |
RMSD bond length | 0.016 |
RMSD bond angle | 2.869 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXDE |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 24.890 | 1.550 |
High resolution limit [Å] | 1.510 | 1.510 |
Rmerge | 0.078 | 1.318 |
Rpim | 0.039 | 0.588 |
Number of reflections | 5452 | 394 |
<I/σ(I)> | 11.4 | 1.4 |
Completeness [%] | 96.7 | 97.2 |
Redundancy | 6.2 | 5.9 |
CC(1/2) | 0.998 | 0.593 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 292 | 1uL 1mM dsDNA, 1ul 4mM rac[Ru(TAP)2(dppz-11-CM)]2+, 6ul of a solution containing 10% (v/v) 2-methyl-2,4-pentanediol, 80mM NaCl, 20mM Na-cacodylate pH 7, 20mM BaCl2 and 12mM spermine tetra-HCl equilibrated against 500uL 35% 2-methyl-2,4-pentanediol. |