5N71
CRYSTAL STRUCTURE OF MATURE CATHEPSIN D FROM THE TICK IXODES RICINUS (IRCD1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-15 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.918410 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 98.156, 98.156, 90.795 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.080 - 1.880 |
R-factor | 0.19933 |
Rwork | 0.198 |
R-free | 0.22441 |
Structure solution method | FOURIER SYNTHESIS |
RMSD bond length | 0.014 |
RMSD bond angle | 1.552 |
Data reduction software | XDS |
Data scaling software | XDS |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.080 | 1.990 |
High resolution limit [Å] | 1.880 | 1.880 |
Rmerge | 0.085 | 0.948 |
Number of reflections | 36745 | |
<I/σ(I)> | 16.16 | 2.33 |
Completeness [%] | 99.6 | 98 |
Redundancy | 7.98 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | CRYSTALLIZATION CONDITIONS: 1:1 PROTEIN (6 MG/ML IN 2 MM BIS-TRIS, PH 6.5, 20 MM SODIUM CHLORIDE) TO RESERVOIR (0.2 M AMMONIUM SULFATE, 0.1 M SODIUM ACETATE, PH 4.6, 30% PEG2000 MME), CRYOCOOLED IN MOTHER LIQUOR, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K |