5MY4
Structure of Pyroglutamate-Abeta-specific Fab c#17 in complex with human Abeta-pE3-12PEGb
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | ROTATING ANODE |
| Source details | RIGAKU MICROMAX-007 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2012-02-22 |
| Detector | RIGAKU SATURN 944+ |
| Wavelength(s) | 1.5418 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 43.170, 87.142, 58.029 |
| Unit cell angles | 90.00, 96.06, 90.00 |
Refinement procedure
| Resolution | 28.852 - 2.211 |
| R-factor | 0.1894 |
| Rwork | 0.186 |
| R-free | 0.24950 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2dqt |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.988 |
| Data reduction software | XDS |
| Data scaling software | XSCALE |
| Phasing software | PHASER (2.3.0) |
| Refinement software | PHENIX |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 28.852 | 30.000 | 2.310 |
| High resolution limit [Å] | 2.210 | 28.852 | 2.210 |
| Rmerge | 0.087 | 0.259 | |
| Rmeas | 0.092 | 0.306 | |
| Number of reflections | 40703 | 4119 | |
| <I/σ(I)> | 18.84 | 4.55 | |
| Completeness [%] | 98.1 | 86.8 | |
| Redundancy | 8.868 | 3.355 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 286 | 25% w/v PEG 3350, 100 mM bis-Tris, 200 mM magnesium chloride, 0.5% n-dodecyl-beta-D-maltoside |
