Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MY3

Crystal structure of the RhoGAP domain of Rgd1p at 2.19 Angstroms resolution

Replaces:  4U3K
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-2
Synchrotron siteESRF
BeamlineID23-2
Temperature [K]100
Detector technologyPIXEL
Collection date2014-04-04
DetectorDECTRIS PILATUS 2M-F
Wavelength(s)0.953700
Spacegroup nameP 65
Unit cell lengths63.230, 63.230, 99.730
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution54.760 - 2.190
R-factor0.1639
Rwork0.162
R-free0.20220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4U3K
RMSD bond length0.012
RMSD bond angle1.469
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]54.7602.250
High resolution limit [Å]2.1902.190
Rmerge0.0410.780
Rmeas0.0621.060
Number of reflections116161831
<I/σ(I)>25.572.29
Completeness [%]99.697.9
Redundancy13.5213.28
CC(1/2)0.9900.650
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.56298HEPES, PEG3350, NAN3, TRIS, DTT, PH 7.56

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon