Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5MVL

Crystal structure of an A-DNA dodecamer containing 5-bromouracil

Experimental procedure
Experimental methodMAD
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I02
Synchrotron siteDiamond
BeamlineI02
Temperature [K]100
Detector technologyPIXEL
Collection date2016-02-10
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.920, 1.240
Spacegroup nameP 32 2 1
Unit cell lengths43.517, 43.517, 60.850
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution23.673 - 1.405
R-factor0.1584
Rwork0.157
R-free0.18230
Structure solution methodMAD
RMSD bond length0.009
RMSD bond angle1.067
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareSHELXD
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 Overall
Low resolution limit [Å]23.673
High resolution limit [Å]1.405
Number of reflections13446
<I/σ(I)>23.4
Completeness [%]99.9
Redundancy9.3
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6293Sodium chloride (80 mM) Potassium chloride (12 mM) Magnesium chloride (20 mM) Spermine tetrahydrochloride (12 mM) Sodium cacodylate (40 mM, pH 6.0) MPD (40 % v/v)

247947

PDB entries from 2026-01-21

PDB statisticsPDBj update infoContact PDBjnumon