5MTZ
Crystal structure of a long form RNase Z from yeast
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SOLEIL BEAMLINE PROXIMA 1 |
Synchrotron site | SOLEIL |
Beamline | PROXIMA 1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2014-03-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 41 |
Unit cell lengths | 136.000, 136.000, 115.810 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.610 - 2.990 |
R-factor | 0.1849 |
Rwork | 0.181 |
R-free | 0.26170 |
Structure solution method | SAD |
RMSD bond length | 0.011 |
RMSD bond angle | 1.503 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | SHELXCD |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.610 | 49.607 | 3.170 |
High resolution limit [Å] | 2.990 | 8.840 | 2.990 |
Rmerge | 0.059 | 2.274 | |
Rmeas | 0.063 | 2.437 | |
Number of reflections | 83709 | 3230 | 13304 |
<I/σ(I)> | 7.52 | 29.94 | 0.83 |
Completeness [%] | 99.7 | 99.5 | 98.4 |
Redundancy | 7.8 | 7.757 | 7.629 |
CC(1/2) | 0.991 | 0.997 | 0.381 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M Hepes, pH 7.5, 25% (w/v) PEG 8000 |