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5MRX

27-nt SRL with a 5-hydroxymethyl cytidine modification

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06DA
Synchrotron siteSLS
BeamlineX06DA
Temperature [K]100
Detector technologyPIXEL
Collection date2016-11-27
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.77
Spacegroup nameP 43
Unit cell lengths29.510, 29.510, 76.800
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.510 - 0.851
R-factor0.1587
Rwork0.145
R-free0.16820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3dvz
RMSD bond length0.006
RMSD bond angle1.123
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.9_1692)
Data quality characteristics
 Overall
Low resolution limit [Å]50.000
High resolution limit [Å]0.850
Rmeas0.045
Number of reflections57106
<I/σ(I)>30.32
Completeness [%]99.6
Redundancy22.36
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293well: 3.0M (NH4)2SO4 drop: 50mM KMops pH7.0, 10mM MnCl2, 10mM MgCl2, 1.0mM Na-EDTA pH 8.0, 10mM Tris pH 8.0, RNA 2.5mg/ml 2vol drop + 1vol well

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