5MEJ
Structural study of the X-ray induced enzymatic reduction of molecular oxygen to water for laccase from Steccherinum murashkinskyi. First structure of the series with 3 min total X-ray exposition time.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X13 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X13 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2009-11-27 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.81230 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.370, 84.390, 112.480 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.570 - 1.500 |
R-factor | 0.1405 |
Rwork | 0.139 |
R-free | 0.16147 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5e9n |
RMSD bond length | 0.017 |
RMSD bond angle | 1.826 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0049) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 67.600 | 1.650 | |
High resolution limit [Å] | 1.500 | 10.000 | 1.500 |
Rmerge | 0.062 | 0.016 | 0.352 |
Number of reflections | 84461 | ||
<I/σ(I)> | 14.85 | 48.88 | 3.25 |
Completeness [%] | 97.6 | 75.2 | 94.1 |
Redundancy | 3.1 | ||
CC(1/2) | 0.998 | 0.999 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4 | 294 | Protein solution (12mg/ml, 0.02M K-phosphate buffer, pH 6.5). Reservoir solution (0.1M citrate-phosphate buffer pH 4.0, 0.2M ammonium acetate, 25% PEG 4000). |