5MDJ
Crystal structure of an O2-tolerant [NiFe]-hydrogenase from Ralstonia eutropha in a its as-isolated high-pressurized form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-06-13 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 73.395, 95.696, 121.565 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.850 - 1.480 |
R-factor | 0.14398 |
Rwork | 0.142 |
R-free | 0.17234 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4IUB/4TTT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.357 |
Data reduction software | XDS |
Data scaling software | SCALA |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.850 | 1.560 |
High resolution limit [Å] | 1.480 | 1.480 |
Rmerge | 0.064 | 0.839 |
Number of reflections | 142561 | |
<I/σ(I)> | 12.5 | 2 |
Completeness [%] | 99.8 | 99.4 |
Redundancy | 5.6 | 5.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 277 | 20-30%PEG3350, 0.1M BIS-TRIS ph 5.5-6.5 |