5M5T
Clathrin heavy chain N-terminal domain bound to a non-natural clathrin-box motif peptide (Amph4T1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-01-24 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.91742 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 137.810, 130.970, 79.120 |
Unit cell angles | 90.00, 116.17, 90.00 |
Refinement procedure
Resolution | 33.590 - 1.700 |
R-factor | 0.15927 |
Rwork | 0.158 |
R-free | 0.18507 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1c9i |
RMSD bond length | 0.014 |
RMSD bond angle | 1.619 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 33.600 | 1.740 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.055 | 0.751 |
Number of reflections | 128743 | |
<I/σ(I)> | 13.1 | 1.6 |
Completeness [%] | 98.2 | 94.5 |
Redundancy | 3.9 | 3.4 |
CC(1/2) | 0.999 | 0.564 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 1 uL protein:peptide mix (14 mg/mL NTD and 3.4 mM peptide) plus 1 uL reservoir equilibrated against a 200 uL reservoir of 1.1 M sodium malonate pH 8.0 |