5M4Q
Crystal Structure of Wild-Type Human Prolidase with Mn ions and Pro ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-05-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.918 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 103.429, 107.005, 216.125 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.650 - 1.730 |
R-factor | 0.152 |
Rwork | 0.151 |
R-free | 0.18000 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.074 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.948 | 1.830 |
High resolution limit [Å] | 1.728 | 1.730 |
Rmerge | 0.082 | 1.333 |
Number of reflections | 124682 | |
<I/σ(I)> | 17.11 | 1.39 |
Completeness [%] | 99.8 | 99 |
Redundancy | 6.76 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | 10mM NaBorate, 690-760mM NaCitrate |