5LV1
2.12 A resolution structure of PtxB from Prochlorococcus marinus (MIT 9301) in complex with phosphite
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-09-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.92819 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 152.175, 152.175, 67.915 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 131.790 - 2.120 |
R-factor | 0.21993 |
Rwork | 0.218 |
R-free | 0.26396 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5jvb |
RMSD bond length | 0.011 |
RMSD bond angle | 1.465 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0151) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 131.790 | 2.160 |
High resolution limit [Å] | 2.120 | 2.120 |
Rmerge | 0.086 | 0.733 |
Number of reflections | 51504 | |
<I/σ(I)> | 7.7 | 1.4 |
Completeness [%] | 100.0 | 100 |
Redundancy | 19.1 | 15.7 |
CC(1/2) | 0.996 | 0.648 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5 | 283 | 0.1 M Magnesium chloride, 0.1 M sodium citrate pH 5.0 and 15 % PEG 4000 |