5LUR
An avidin mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-02-06 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 76.130, 80.350, 43.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.560 - 2.700 |
R-factor | 0.17971 |
Rwork | 0.177 |
R-free | 0.23995 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4u46 |
RMSD bond length | 0.013 |
RMSD bond angle | 1.717 |
Data reduction software | XDS (VERSION Oct 15, 2015 BUILT=20151231) |
Data scaling software | XSCALE (VERSION Oct 15, 2015 BUILT=20151231) |
Phasing software | PHASER (2.6.0) |
Refinement software | REFMAC (5.8.0155) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.560 | 2.800 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.120 | 0.600 |
Number of reflections | 7458 | |
<I/σ(I)> | 10.37 | 2.11 |
Completeness [%] | 96.3 | 98.7 |
Redundancy | 3.8 | 4 |
CC(1/2) | 0.990 | 0.700 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 294 | Drop size: 150 nl of protein-ligand solution and well solution. Protein-ligand solution: 1.8 mg/ml of protein solution (20 mM sodium phosphate, 1M sodium chloride, 20mM imidazole, pH 7.4) and 50 mM ligand solution (1.57 mg in 100 microL of water) were mixed in 10:1 (v/v) ratio. Well solution: 0.18 M sodium chloride, 0.09 M sodium cacodylate (pH 6.5) and 1.8 M ammonium sulfate. |