5LQD
Trehalose-6-phosphate synthase, GDP-glucose-dependent OtsA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-10-19 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.920 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.430, 168.350, 133.920 |
Unit cell angles | 90.00, 97.19, 90.00 |
Refinement procedure
Resolution | 32.640 - 1.950 |
R-factor | 0.1988 |
Rwork | 0.197 |
R-free | 0.23760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3vdn |
RMSD bond length | 0.012 |
RMSD bond angle | 1.467 |
Data reduction software | XDS |
Data scaling software | Aimless (0.1.29) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 32.640 | 32.640 | 2.000 |
High resolution limit [Å] | 1.950 | 8.720 | 1.950 |
Rmerge | 0.101 | 0.022 | 1.106 |
Number of reflections | 131515 | ||
<I/σ(I)> | 14.6 | 67.2 | 1.6 |
Completeness [%] | 99.6 | 97.8 | 98.6 |
Redundancy | 6.9 | 7.3 | 6.2 |
CC(1/2) | 0.998 | 1.000 | 0.611 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | Morpheus condition B7 (0.12 M ethylene glycols, 0.1 M imidazole and 2-(N-morpholino)ethanesulfonic acid (MES), pH 6.5, 30% (v/v) ethylene glycol and PEG 8K |