5LPS
tRNA guanine Transglycosylase (TGT) in co-crystallized complex (space group C2) with 6-amino-2-(methylamino)-4-(2-((2R,3R,4S,5R,6S)-3,4,5,6-tetramethoxytetrahydro-2H-pyran-2-yl)ethyl)-1H-imidazo[4,5-g]quinazolin-8(7H)-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-1 |
Synchrotron site | ESRF |
Beamline | ID23-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-05-12 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97917 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 84.951, 64.573, 71.001 |
Unit cell angles | 90.00, 93.62, 90.00 |
Refinement procedure
Resolution | 42.370 - 1.270 |
R-factor | 0.151 |
Rwork | 0.150 |
R-free | 0.16830 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1p0d |
RMSD bond length | 0.005 |
RMSD bond angle | 0.811 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: 1492)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.390 | 1.350 |
High resolution limit [Å] | 1.270 | 1.270 |
Rmerge | 0.477 | |
Number of reflections | 97768 | |
<I/σ(I)> | 17.2 | 2.8 |
Completeness [%] | 96.7 | 93.4 |
Redundancy | 3.8 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 288 | 13% PEG 8000, 100mM MES, 1mM DTT, 10% DMSO |