5LPQ
tRNA guanine Transglycosylase (TGT) in co-crystallized complex (space group P21) with 6-amino-4-(2-((3aR,4R,6R,6aR)-6-methoxy-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)ethyl)-2-(methylamino)-1H-imidazo[4,5-g]quinazolin-8(7H)-one
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-06 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.7999 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 68.900, 78.851, 84.943 |
Unit cell angles | 90.00, 109.72, 90.00 |
Refinement procedure
Resolution | 43.670 - 2.520 |
R-factor | 0.2289 |
Rwork | 0.227 |
R-free | 0.26240 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1p0d |
RMSD bond length | 0.004 |
RMSD bond angle | 0.479 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: 1492)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.090 | 2.680 |
High resolution limit [Å] | 2.520 | 2.520 |
Rmerge | 0.479 | |
Number of reflections | 28457 | |
<I/σ(I)> | 9.9 | 2.9 |
Completeness [%] | 97.9 | 90.1 |
Redundancy | 3.8 | 3.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 288 | 13% PEG 8000, 100mM MES, 1mM DTT, 10% DMSO |