5LDR
Crystal structure of a cold-adapted dimeric beta-D-galactosidase from Paracoccus sp. 32d strain in complex with galactose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X13 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X13 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-13 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 1.017 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 79.260, 107.580, 201.550 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.270 - 3.150 |
R-factor | 0.18806 |
Rwork | 0.184 |
R-free | 0.26658 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5euv |
RMSD bond length | 0.017 |
RMSD bond angle | 2.091 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.250 |
High resolution limit [Å] | 3.150 | 3.150 |
Rmerge | 0.176 | 0.848 |
Number of reflections | 29579 | |
<I/σ(I)> | 7.77 | 1.63 |
Completeness [%] | 96.7 | 94.4 |
Redundancy | 3.65 | 3.64 |
CC(1/2) | 0.983 | 0.643 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5 | 293 | 24% PEG 2000 0.2M ammonium acetate 0.1M Bis-Tris pH 5.0 |