5LDN
A viral capsid:antibody complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2012-12-10 |
Detector | RIGAKU RAXIS II |
Wavelength(s) | 0.987 |
Spacegroup name | P 63 |
Unit cell lengths | 156.999, 156.999, 144.891 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 78.500 - 2.700 |
R-factor | 0.1673 |
Rwork | 0.164 |
R-free | 0.22290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tg7 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.669 |
Data scaling software | SCALA (3.3.20) |
Refinement software | REFMAC (5.8.0151) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 135.931 | 10.000 | 2.850 |
High resolution limit [Å] | 2.700 | 8.000 | 2.700 |
Rmerge | 0.060 | 0.964 | |
Rmeas | 0.176 | ||
Rpim | 0.058 | ||
Total number of observations | 520799 | ||
Number of reflections | 55555 | ||
<I/σ(I)> | 11.8 | 4.4 | 0.7 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 9.4 | 9.2 | 9.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | PEG 4000, sodium chloride, |