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5LCF

VIM-2 metallo-beta-lactamase in complex with 3-oxo-2-phenylisoindoline-4-carboxylic acid (compound 30)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2016-06-13
DetectorRIGAKU SATURN 944+
Wavelength(s)1.542
Spacegroup nameP 21 21 21
Unit cell lengths40.460, 65.637, 70.721
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution24.055 - 1.860
R-factor0.1303
Rwork0.127
R-free0.16420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4c1d
RMSD bond length0.010
RMSD bond angle0.771
Data reduction softwareCrystalClear
Data scaling softwareSCALEPACK
Phasing softwarePHASER (2.6.0)
Refinement softwarePHENIX
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.930
High resolution limit [Å]1.8604.0101.860
Rmerge0.0580.0340.163
Rmeas0.062
Rpim0.024
Total number of observations110191
Number of reflections16377
<I/σ(I)>18.2
Completeness [%]99.698.897.9
Redundancy6.76.55.7
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.52950.1 M Magnesium Formate, 21% (v/v) Polyethylene glycol 3350, 5 mM 3-oxo-2-phenylisoindoline-4-carboxylic acid, 16 mg/mL protein

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