5KTT
Crystal structure of Pyrococcus horikoshii quinolinate synthase (NadA) with bound L-malate and Fe4S4 cluster
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-04-05 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.97925 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 47.333, 54.639, 55.613 |
Unit cell angles | 90.00, 90.79, 90.00 |
Refinement procedure
Resolution | 29.943 - 1.500 |
R-factor | 0.1485 |
Rwork | 0.146 |
R-free | 0.19260 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ktn |
RMSD bond length | 0.011 |
RMSD bond angle | 1.846 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX ((1.10_2155: 000)) |
Refinement software | PHENIX ((1.10_2155: 000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 35.000 | 1.550 |
High resolution limit [Å] | 1.500 | 1.500 |
Rmerge | 0.046 | 0.484 |
Number of reflections | 44361 | |
<I/σ(I)> | 15.9 | 2.7 |
Completeness [%] | 97.3 | 99.9 |
Redundancy | 2.9 | 2.8 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 296 | 210 mM ammonium chloride, 8 - 15% polyethylene glycol 4000, and 40 mM HEPES, pH 5.5 - 7.5. L-malic acid, pH 5.6, was added to the protein solution to a final concentration of 10 mM |