5KRG
RNA 15mer duplex binding with PZG monomer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 99 |
Detector technology | CCD |
Collection date | 2016-01-26 |
Detector | MAR CCD 165 mm |
Wavelength(s) | 0.97 |
Spacegroup name | P 3 |
Unit cell lengths | 44.046, 44.046, 84.516 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 42.258 - 1.600 |
R-factor | 0.20711 |
Rwork | 0.206 |
R-free | 0.23384 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4nfo |
RMSD bond length | 0.024 |
RMSD bond angle | 2.656 |
Data reduction software | HKL-2000 (2000) |
Data scaling software | HKL-2000 (2000) |
Phasing software | PHASER (2.5.6) |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 1.660 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.110 | 0.270 |
Number of reflections | 21914 | |
<I/σ(I)> | 11.9 | 2.18 |
Completeness [%] | 95.6 | 71.3 |
Redundancy | 4.5 | 1.6 |
CC(1/2) | 0.966 | 0.941 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 291 | 0.01 M Magnesium chloride hexahydrate, 0.05 M HEPES sodium pH 7.0, 4.0 M Lithium chloride |