5KQI
Crystal structure of the L326D variant of catalase-peroxidase from B. pseudomallei
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | CLSI BEAMLINE 08ID-1 |
Synchrotron site | CLSI |
Beamline | 08ID-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-09 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 0.97944 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 100.793, 115.227, 174.543 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.419 - 1.870 |
R-factor | 0.1654 |
Rwork | 0.164 |
R-free | 0.19790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1MWV |
RMSD bond length | 0.028 |
RMSD bond angle | 2.319 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Refinement software | REFMAC (5.8.0151) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 96.162 | 48.419 | 1.970 |
High resolution limit [Å] | 1.870 | 5.910 | 1.870 |
Rmerge | 0.039 | 0.478 | |
Rmeas | 0.105 | ||
Rpim | 0.050 | ||
Total number of observations | 673469 | ||
Number of reflections | 165881 | ||
<I/σ(I)> | 9.3 | 13.6 | 1.6 |
Completeness [%] | 98.9 | 98.2 | 99.8 |
Redundancy | 4.1 | 4 | 4.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293 | MPD, 0.1 M sodium citrate |