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5KHA

Structure of glutamine-dependent NAD+ synthetase from Acinetobacter baumannii in complex with adenosine diphosphate (ADP)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2016-05-25
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 1 21 1
Unit cell lengths71.880, 123.750, 73.650
Unit cell angles90.00, 110.93, 90.00
Refinement procedure
Resolution41.242 - 2.100
R-factor0.1663
Rwork0.165
R-free0.21030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4f4h
RMSD bond length0.007
RMSD bond angle0.898
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (dev_2429)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.150
High resolution limit [Å]2.1009.3902.100
Rmerge0.0990.0230.540
Number of reflections69741
<I/σ(I)>10.8344.12.58
Completeness [%]99.395.798
Redundancy3.7
CC(1/2)0.996
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.5290Microlytic MCSG1, condition H5: 20% PEG 3350, 200mM KCl; AcbaC.18002.a.B1.PS02475 at 19.5mg/ml with 2mM of each AMPPNP, Glutamate, MgCl2, PPi; cryo: 20% EG with 2mM NAD/Mg; puck: exo0-1, tray: 266048 h5

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PDB entries from 2024-11-13

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