5KGM
2.95A resolution structure of Apo independent phosphoglycerate mutase from C. elegans (monoclinic form)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 17-ID |
Synchrotron site | APS |
Beamline | 17-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2013-12-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.850, 94.375, 102.201 |
Unit cell angles | 90.00, 96.57, 90.00 |
Refinement procedure
Resolution | 42.982 - 2.950 |
R-factor | 0.1868 |
Rwork | 0.184 |
R-free | 0.23740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1o98 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.013 |
Data reduction software | XDS |
Data scaling software | Aimless (0.2.14) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 46.480 | 46.480 | 3.130 |
High resolution limit [Å] | 2.950 | 8.850 | 2.950 |
Rmerge | 0.141 | 0.036 | 0.625 |
Rmeas | 0.168 | ||
Rpim | 0.090 | ||
Total number of observations | 90718 | ||
Number of reflections | 27020 | ||
<I/σ(I)> | 9 | ||
Completeness [%] | 99.7 | 98.3 | 99.9 |
Redundancy | 3.4 | 3.5 | 3.5 |
CC(1/2) | 0.985 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 293 | 30% (w/v) PEG 5000 MME, 0.1 M MES , 0.2 M ammonium sulfate |