5KD0
Crystal structure of the aromatic prenyltransferase AtaPT(E91A) mutant from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate and (+)-butyrolactone II
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-12-29 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97892 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 96.690, 139.240, 68.800 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 139.240 - 2.820 |
R-factor | 0.20809 |
Rwork | 0.205 |
R-free | 0.26791 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5kcg |
RMSD bond length | 0.019 |
RMSD bond angle | 1.903 |
Data scaling software | SCALA (3.3.21) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 139.240 | 56.057 | 2.970 |
High resolution limit [Å] | 2.820 | 8.920 | 2.820 |
Rmerge | 0.032 | 0.381 | |
Rmeas | 0.099 | ||
Rpim | 0.034 | ||
Total number of observations | 184329 | ||
Number of reflections | 22776 | ||
<I/σ(I)> | 15.8 | 15.6 | 2 |
Completeness [%] | 98.8 | 99.6 | 98.4 |
Redundancy | 8.1 | 9.3 | 7.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 289 | 25 mM Bis-Tris pH 6.0, 0.2 M (NH4)2SO4, 17% PEG3350, 3.3% DDM |