5KCQ
Crystal structure of the aromatic prenyltransferase AtaPT from Aspergillus terreus A8-4 in complex with geranyl S-thiolodiphosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U |
Synchrotron site | SSRF |
Beamline | BL17U |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2013-09-25 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97907 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 96.330, 135.670, 68.610 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.240 - 2.000 |
R-factor | 0.18776 |
Rwork | 0.186 |
R-free | 0.22356 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5kcg |
RMSD bond length | 0.024 |
RMSD bond angle | 1.911 |
Data scaling software | SCALA (3.3.21) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0071) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 135.670 | 43.132 | 2.110 |
High resolution limit [Å] | 2.000 | 6.320 | 2.000 |
Rmerge | 0.067 | 0.308 | |
Rmeas | 0.119 | ||
Rpim | 0.053 | ||
Total number of observations | 241609 | ||
Number of reflections | 55640 | ||
<I/σ(I)> | 9.9 | 7.9 | 2.2 |
Completeness [%] | 91.3 | 84.6 | 85.8 |
Redundancy | 4.3 | 4.5 | 4.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 289 | 25 mM Bis-Tris pH 6.0, 0.2 M (NH4)2SO4, 17% PEG 3350, 3.3% DDM |