5KC9
Crystal structure of the amino-terminal domain (ATD) of iGluR Delta-1 (GluD1)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2012-04-28 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.91730 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 128.420, 128.420, 153.230 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 59.220 - 2.300 |
R-factor | 0.2006 |
Rwork | 0.199 |
R-free | 0.22730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5kc8 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.855 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (dev_1772) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.220 | 2.360 |
High resolution limit [Å] | 2.300 | 2.300 |
Rmerge | 0.051 | 1.222 |
Number of reflections | 65080 | |
<I/σ(I)> | 22.6 | 1.9 |
Completeness [%] | 99.7 | 98.5 |
Redundancy | 8.5 | 8.7 |
CC(1/2) | 1.000 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M MES (2-ethanesulfonic acid)/imidazole pH 6.5, 10% (w/v) polyethylene glycol 8000, 20% (w/v) ethylene glycol, 0.02 M 1,6-hexanediol, 0.02 M (RS)-1,2-propanediol, 0.02 M 1-butanol, 0.02 M 2-propanol, 0.02 M 1,4-butanediol and 0.02 M 1,3-propanediol |