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5JTW

Crystal structure of complement C4b re-refined using iMDFF

Replaces:  4XAM
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyPIXEL
Collection date2014-05-14
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.9840
Spacegroup nameP 1 21 1
Unit cell lengths121.500, 161.080, 131.600
Unit cell angles90.00, 107.26, 90.00
Refinement procedure
Resolution49.376 - 3.500
R-factor0.2495
Rwork0.248
R-free0.29350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4xam
RMSD bond length0.003
RMSD bond angle0.826
Data reduction softwareXDS (November 11, 2013)
Data scaling softwareXSCALE (Oct 15, 2015)
Phasing softwarePHASER
Refinement softwarePHENIX (dev_2376)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.5403.590
High resolution limit [Å]3.5008.4203.500
Rmerge0.4920.0733.133
Number of reflections60261
<I/σ(I)>4.5520.820.65
Completeness [%]98.696.199.3
Redundancy7.14
CC(1/2)0.949
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7292the crystals appeared after mixing C4b at 4 mg/ml in 20 mM HEPES pH 7.5, 100 mM sodium chloride with 100 mM HEPES pH 7.0, 400 mM magnesium chloride, 7.5% PEG8000 and a microseeding stock at the volume ration 1:1:0.5. The crystals appeared in 1-2 weeks and reached the final size in 1 month

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